Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDL-NIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
1SSP Chain:E ((7-220))
------------SWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL--
General information:
TITO was launched using:
RESULT:
Template:
1SSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99225 for 1791 contacts (-55.4/contact) +
2D Compatibility (PS) -22806 + (NN) -12960 + (LL) 720
1D Compatibility (HY) -21600 + (ID) 5800
Total energy: -161671.0 ( -90.27 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1SSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSP-query.scw
PDB file :
Tito_Scwrl_1SSP.pdb
: