Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLCNVVVLISGSGSNLQALIDSLRDGATPARIRAVISNRADAYGLERARQAGIQTEVLDHKAYADRESFDEALAQRIDAHEPHLVILAGFMRILSADFVRHYQGRLLNIHPSLLPRHKGLHTHQRALEAGDREHGCSVHFVTEELDGGPLVVQAVIPVESQDTPERLARRVHEEEHRIYPLAMRWFAEGRLRLGEQGALLDGQALPATGHQIRTKEIRNA
1CDD Chain:B ((2-208))
-----NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHP-----------------------GTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYAADE------
General information:
TITO was launched using:
RESULT:
Template:
1CDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156237 for 1444 contacts (-108.2/contact) +
2D Compatibility (PS) -20649 + (NN) -11697 + (LL) 2332
1D Compatibility (HY) -21200 + (ID) 5300
Total energy: -212751.0 ( -147.33 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1CDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CDD-query.scw
PDB file :
Tito_Scwrl_1CDD.pdb
: