Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQSTRKLLAGLALAVSAGLVQAAPEVRIYNWFDYIAPDTLKNFQAQTGIAPKYDVYDSNEVLEAKLLSGHSGYDLVVPSDSFLPNYLKAEVFQPLDKSKLPNWKNLNPALLKVLAGKDP-GNRYVMPYMWGTNGIAYNLDKVRAVLGDDAPLDSWDLVFKPENLAKLQQCGVAFLDSPTEVIPEVLHYLGLSPNSHQPEDYR-RAEEHLAKLRPYITYFSSSKFVSDLANGNVCVAIAWSGGAMQAANRAREAKNGIRIEYRIPKEG-AAAWFDVLAIPRDAKNVEQAHAFLDYLLRPEVVAPISDYVAYANPNKAADGLISAELRDNPNVYPPEEVQARLYSVEMLPPKLERLRTRTWSKIKTGK |
| 2V84 Chain:A ((25-342)) | -----------------------DVLYLYNWTYYTPTSLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLLEKIDLSKIPNVQFIKESVRAR--IAYDPKMEYSVPYYLGAAGIAVNKKAVPS------YARTWSIFSRKDLAYR-----MSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGFAEAFFAETPE----AMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREA---AAYQKKT-P-YYSEHDLERGTLKTDVG-AAIEHYNAHWNAVRFR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V84.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115840 for 2689 contacts (-43.1/contact) +
2D Compatibility (PS) -33394 + (NN) -15258 + (LL) 3640
1D Compatibility (HY) -17200 + (ID) 3900
Total energy: -181952.0 ( -67.67 by residue)
QMean score : 0.497
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