Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKAT-GDVRAVADGSQIDWQAT-GNLVVPVVAYVDDKPVFRAEITMYVSQA
1ZKI Chain:A ((6-131))
---------------MPAREQMISAYSELVGLDPVSLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSSHGFDRQSVTLECKINYIRAVADGEVRCVARVL----HAGRRSLVVEAEVRQGDKLVAKGQGTFAQL--
General information:
TITO was launched using:
RESULT:
Template:
1ZKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83982 for 957 contacts (-87.8/contact) +
2D Compatibility (PS) -13077 + (NN) -983 + (LL) 2188
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: -100554.0 ( -105.07 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1ZKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZKI-query.scw
PDB file :
Tito_Scwrl_1ZKI.pdb
: