Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNRQNGTVKWFNDAKGFGFIT-------P-ESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQKGLQADEVQVV
4ALP Chain:B ((8-78))
---RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRV---
General information:
TITO was launched using:
RESULT:
Template:
4ALP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28983 for 396 contacts (-73.2/contact) +
2D Compatibility (PS) -6586 + (NN) -912 + (LL) 604
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -42877.0 ( -108.28 by residue)
QMean score : 0.766
(partial model without unconserved sides chains):
PDB file :
Tito_4ALP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ALP-query.scw
PDB file :
Tito_Scwrl_4ALP.pdb
: