Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAITALPSADGQELTIQIQGRFDFGAHQDFRDAYERVA----------------------------------------ITPRRYVVDLRNATYLDSSALGMLLLLRDHAGGENAQISLANCSPEVRKILAISNFEQLFKIS
3AGD Chain:A ((322-448))
--------REGDRVFLHLQGVIRFGGAEAVLDALTDLRTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAANDGPIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPERIL----------------
General information:
TITO was launched using:
RESULT:
Template:
3AGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44501 for 517 contacts (-86.1/contact) +
2D Compatibility (PS) -8106 + (NN) -4079 + (LL) 2448
1D Compatibility (HY) -4400 + (ID) 550
Total energy: -59188.0 ( -114.48 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_3AGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AGD-query.scw
PDB file :
Tito_Scwrl_3AGD.pdb
: