Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTRE--PFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAFVEK
3FPK Chain:B ((5-228))
-ADWVTGKVTKVQNWTDALFSL-TVHAPINPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPNLEFYLVTVPQGKLSPRLAALKPGDEVQVVSDASGFFVLDEVPDCETLWMLATGTAIGPYLSILQYGQDVARFKNLVLVHAARFAADLSYLPLMLEL--QQRYEG-----KLRIQTVVSRENVPGSLTGRVPALIENGELEKAVGL-PMDKETSHVMLCGNPQMVRDTQQLL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FPK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139689 for 1795 contacts (-77.8/contact) +
2D Compatibility (PS) -23988 + (NN) -7259 + (LL) 1868
1D Compatibility (HY) -21200 + (ID) 4050
Total energy: -194318.0 ( -108.26 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3FPK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FPK-query.scw
PDB file :
Tito_Scwrl_3FPK.pdb
: