Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNSSRSVNPRPSFAPRALSLAIALLLGAPAFAANSGEAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQW-G-DWSAYFMGQAVAATDTIETDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLRED-----SGQWQDTNIEALNWSFET-TLLNAHAGVAQRFSEYRTDLD-ELA-----PEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLR----EDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF |
| 3SZV Chain:A ((23-398)) | ---------------------------------------SHASLELRNFYFNRDFR----------DEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDS---------------------QDDYAKLGLT-AKARV----SNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFD--FAGGDYRLTPALTASLHQGRLKDIY--------------------RQTFAGLVHTLD-LG--RSLKSDLRFARASEDGG---------------FRELDNRAFGALFSLRL--G-AHAVAAGYQRISGDD-----PYP--YIAGSD-PYLVN-F--IQIG---DFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARG-------------AANDGKEWERNTDLGYVVQSGPL----------KNLGVKWRNATVRSNF----ANDLDENRLILSYSL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SZV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 50953 for 2488 contacts (20.5/contact) +
2D Compatibility (PS) -33479 + (NN) 1582 + (LL) 6188
1D Compatibility (HY) 400 + (ID) 1650
Total energy: 23994.0 ( 9.64 by residue)
QMean score : 0.076
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