Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
2GLM Chain:C ((26-171))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE-
General information:
TITO was launched using:
RESULT:
Template:
2GLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117046 for 1036 contacts (-113.0/contact) +
2D Compatibility (PS) -14885 + (NN) -3841 + (LL) 720
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -155402.0 ( -150.00 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2GLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GLM-query.scw
PDB file :
Tito_Scwrl_2GLM.pdb
: