Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
3TH8 Chain:B ((19-239))
-----------RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAF---------------MELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR-------------------
General information:
TITO was launched using:
RESULT:
Template:
3TH8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134075 for 1559 contacts (-86.0/contact) +
2D Compatibility (PS) -22756 + (NN) -11977 + (LL) 2944
1D Compatibility (HY) -21200 + (ID) 5700
Total energy: -192764.0 ( -123.65 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3TH8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TH8-query.scw
PDB file :
Tito_Scwrl_3TH8.pdb
: