Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNPVLPEQAQEALDAFGHTASWEQRARLLLQWGERLAPLAEHERQEEHRVHGCESLVWLLGEQRDGHWRFRADSDARLIRGLLAVLLARVDGIETRELARLDLNDWFTCLGLSRQLSPSRSNGLNAVLQRMRELAGQTAG
1FC3 Chain:A ((140-258))
NKPKNLDASITSIIHEIG-VPAHIKGYLYLREAIAMVYHDIELLGSIT------KVLYPDIAKKYN-------TTASRVERAIRHAIEVAWSRGNLESISSLFGYTVSV-----SKAKPTNSEFIAMVADKLRL---EHKA
General information:
TITO was launched using:
RESULT:
Template:
1FC3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15283 for 860 contacts (-17.8/contact) +
2D Compatibility (PS) -13125 + (NN) -9549 + (LL) 1168
1D Compatibility (HY) -800 + (ID) 600
Total energy: -38189.0 ( -44.41 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1FC3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FC3-query.scw
PDB file :
Tito_Scwrl_1FC3.pdb
: