Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
1OBW Chain:B ((1-171))
-SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEI---VASFER
General information:
TITO was launched using:
RESULT:
Template:
1OBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87958 for 1328 contacts (-66.2/contact) +
2D Compatibility (PS) -19083 + (NN) -11779 + (LL) 468
1D Compatibility (HY) -20000 + (ID) 6100
Total energy: -144452.0 ( -108.77 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1OBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OBW-query.scw
PDB file :
Tito_Scwrl_1OBW.pdb
: