Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRMPLATASLLALAISLAGCGDDKKAEAPATPAASTQPAAPAAAPAAKVDEAAAKAVIKNYADLAEATFADALSTAKDLQKAIDAFLAKPDAETLKAAKEAWFAARTPYSQSEAFRFGNAIIDDWEGQVNAWPLDEGLIDYVAKDYQHALGNPGATANIVANTEIQV-GEDKIDVKEITGEKLASLNELGGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPATDYAQGK-----DCTGGHCDRRAAYLKAVTDLLVSDLEYMAGQWKAGVADNYRAKL---EAEPVDTGLRKMFFGMGSLSLGELAGERMKVALEANSTEDEHDCFSDDTHHTLFFNG-KSIRNIYLGEYKRIDGSVVKG----PSLA----DLVAKADAAANDTLKADLADTEAK-LQAIVDSAEKDGVHFDQMIAPDNKDG--QQKIRDAIAALVKQ-----TGAIEQAAGKLGIQDLKPDNADHEF------------ |
| 4C2E Chain:A ((2-436)) | ------------------ADSERDKAMDKIEKAYELISNEYVEKVDREKLLEGAIQGMLSTLND-PYSVYMD-KQTAKQFSDSLDSSFEGIGAEVGME--DGKIIIVSPFKKSPAEKAG-LKPNDEIISINGESMAG-------KDLNHAVLKIRGKKGSSVSMKIQRPGTKKQLSFRIKRAEI-PLETVFASEKKV--QGHSVGYIAISTFSEHTTEDFAKALRELEKKEIEGLVIDVRGNPGGYIQSVEEILKHFVTKDQPYIQIAERNGDKKRYFSTLTHKKAYPVNVITDK-----GSAAASEILAGALKEAGHYDVVGDTS--FGKGTVQQAVPMGDGSNIKLTLYKWLTPNGNWIHKKGIEPTIAIKQPDYFSAGPLQLKEPLKVDMNNEDVKHAQVLLKGLSFD---------PGREDGYFSKDMKKAVMAFQDQNKLNKTGIIDTRTAETLNQQIEKKKSDEKNDLQLQTALKSLF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 94333 for 2978 contacts (31.7/contact) +
2D Compatibility (PS) -41800 + (NN) -3024 + (LL) 4716
1D Compatibility (HY) -5600 + (ID) 3900
Total energy: 44725.0 ( 15.02 by residue)
QMean score : 0.203
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