Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGK---------------------G----LKS----LVKA-------PLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVAG--T-------------------ANRSLAPIARRVCEA--------FPD-------TFPASDKRLTTGNPVRGELFLDAHAR-A--PLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG |
| 2YJN Chain:A ((19-435)) | SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPA--LTEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTF--AAPIAAAVTGTPHARLLWGPDITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRY-VDYNGPSVVPEWLHDEPERRRVCLTL---------QVSIEELLGAVGD-VDAEIIATFDAQQLEGVAN----IPDNVRTVGFVPM-HALLPTCAATVHHGGPGSWHTAAIHGVPQVILPD----GWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSPAEVVGICEELAA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YJN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178573 for 2718 contacts (-65.7/contact) +
2D Compatibility (PS) -35461 + (NN) -13324 + (LL) 664
1D Compatibility (HY) -4000 + (ID) 2800
Total energy: -233494.0 ( -85.91 by residue)
QMean score : 0.465
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