Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
3HSD Chain:B ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDALNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
3HSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112397 for 1149 contacts (-97.8/contact) +
2D Compatibility (PS) -16198 + (NN) -6968 + (LL) 832
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -154681.0 ( -134.62 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_3HSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HSD-query.scw
PDB file :
Tito_Scwrl_3HSD.pdb
: