Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIAVVGAAGRMGKNLIEAVQQTGGAAGLTAAVDRPDSTLVGADAGELAGLGRIGVPLSGDLGKVCEEFDVLIDFTHPSVTLKNIEQCRKARRAMVIGTTGFSADEKLLLAEAAKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHKVDAPSGTALRMGEVVAQALGRDLQEVAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKASSRMTFARGAVRAALWLEGKENGLYDMQDVLGLR
1VM6 Chain:B ((14-224))
--KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN---------------GVEELDSP------------DVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLED-WDVEIVETHHRFKKDAPSGTAI----LLESALGK--------------------SVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVI---
General information:
TITO was launched using:
RESULT:
Template:
1VM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167461 for 1726 contacts (-97.0/contact) +
2D Compatibility (PS) -23150 + (NN) -11296 + (LL) 3276
1D Compatibility (HY) -19600 + (ID) 4300
Total energy: -222531.0 ( -128.93 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1VM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VM6-query.scw
PDB file :
Tito_Scwrl_1VM6.pdb
: