Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------------------------------------------------MAGKKKSEKESSWIGEIEKYSRQIWLAGLGAYSKVSKDGSKLFETL----VKDGEKAEKEAKSDVD---AQVGAAKASARSAKSKVDEVRD-RALGKWSELEEAFDKRLN------SAISRLGVPSRNEVKELHSKVDTLTKQIEKLTGVSVKPAAKAAAKPAAKPAAKPAAKTAAAKPAA------KPAAKAAAKPAAKPAAKKTAAKTAAAKPAAKPAAKPTAKAAAKPATKPAAKAAAKPAAKPAAAKPAAKPAAKPAAATAAKPAAKPAAKPAAKKPAAKKPAAKP---AAAKPAAPAASSSAPAAPAATPAASAPAANAPATPSSQG---------------------------- |
| 4DVZ Chain:A ((308-829)) | LMGSHNGKVSLLYAGDKHDWNATVGYKDNVATLINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKD-YEKNVTLQGSLKHDGVMFVDYSFNKVAVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DVZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 150682 for 1978 contacts (76.2/contact) +
2D Compatibility (PS) -33075 + (NN) -549 + (LL) 104
1D Compatibility (HY) -2000 + (ID) 2100
Total energy: 113062.0 ( 57.16 by residue)
QMean score : 0.266
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