Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSADKPEQ-------PEHDQEMPLVSHLTELRTRLLRSVAAIFLIFAGLFYFSQKIYTLVSEPLRRFLPEGTSMIATDVASPFLAPFKLTMVVALFLAM----------------PVILAQVWGFIAPGLYKHEKRVALPLLVSSI----ILFYAGMAFAYFLVFPM---IFHFFASVTPEGVAMMTDINSY-----LDFVLTLFFAFGVAFEIPVATVLLIWI--------------------------GVVDVDYLKKIRPYVIIGCFVVG--------MVLTPPDIFSQTMLAVPMWLLFEIGLLFGRLVRKR---GEHPDDQPASDGDQPPATRQ |
1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171448 for 2029 contacts (-84.5/contact) +
2D Compatibility (PS) -26862 + (NN) -6890 + (LL) 120
1D Compatibility (HY) -21200 + (ID) 2050
Total energy: -228330.0 ( -112.53 by residue)
QMean score : 0.252
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