Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFNTEVQPGICMEPDAITQEYVFNHTMLRVKDPKRSLDFYSRVLGMRLLRRLDFEEGRFSLYFLAMTRGEEVPDAVDERQRYTFGRQSVLELTHNWGSESDDSQ-YHNGNQDPRGFGHICFSVPDLVAACERFETLGVNFVKPLDRG-MKNVAFISDPDGYWVEIVQASLNGEMGRG
3W0T Chain:C ((17-178))
-----EAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEIL-----------
General information:
TITO was launched using:
RESULT:
Template:
3W0T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81471 for 1044 contacts (-78.0/contact) +
2D Compatibility (PS) -17532 + (NN) -11065 + (LL) 512
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -132056.0 ( -126.49 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_3W0T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W0T-query.scw
PDB file :
Tito_Scwrl_3W0T.pdb
: