Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSLQAKILDPRLGSDFPLPQYATPGSAGLDLRAMLKEDSVLGPGQTLLIPTGLSIYIADPGLAALVLPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRGESPFTIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGHSGSH
4OOP Chain:B ((40-165))
------------------IPTRGSPLSAGYDLSSAV--DSKVPARGKALIPTDLSIAVPE-GTYARIAPRSGLAWKHSIDVG--AGVIDADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVVEVDDLDETVRGDGGFGSTG--
General information:
TITO was launched using:
RESULT:
Template:
4OOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99081 for 784 contacts (-126.4/contact) +
2D Compatibility (PS) -13634 + (NN) -3634 + (LL) 1024
1D Compatibility (HY) -8400 + (ID) 2650
Total energy: -126375.0 ( -161.19 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_4OOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OOP-query.scw
PDB file :
Tito_Scwrl_4OOP.pdb
: