Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSALVGVIMGSKSDWSTLSHTADMLDKLGIPYEVKVVSAHRTPDLLFQYAEEAEGRGLEVIIAGAGGAAHLPGMCAAKTHLPVLGVPVQSSMLSGVDSLLSIVQMPAGVPVATLAIGKAGAVNAALLSASILGAKHPQYHEALKQFRANQTETVLDNPDPRDA
2FWP Chain:B ((24-181))
---VVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPITE--
General information:
TITO was launched using:
RESULT:
Template:
2FWP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129249 for 1318 contacts (-98.1/contact) +
2D Compatibility (PS) -17247 + (NN) -7688 + (LL) 392
1D Compatibility (HY) -15600 + (ID) 4900
Total energy: -174292.0 ( -132.24 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_2FWP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FWP-query.scw
PDB file :
Tito_Scwrl_2FWP.pdb
: