Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSFVLLAFTLSLLAGCSSGPRLNTDYTSANQDSRVQFIVLHYTSTDLPHSLGILTHGGVSAHYLIGDD-----EPATVYRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQGYRDTPQGRVWYPFSEAQIQALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLADAGLVPWPKPGELARR-LAELNGQLPDVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKYRPARFDGEPDLETAALLLAVPTS
3D2Y Chain:A ((11-256))
-----------------KEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDM-TPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLE-
General information:
TITO was launched using:
RESULT:
Template:
3D2Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102808 for 1861 contacts (-55.2/contact) +
2D Compatibility (PS) -26654 + (NN) -20224 + (LL) 1888
1D Compatibility (HY) -15600 + (ID) 5000
Total energy: -168398.0 ( -90.49 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3D2Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D2Y-query.scw
PDB file :
Tito_Scwrl_3D2Y.pdb
: