Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEFVLLGFSDIPNLHWMLFSIFLLMYLMILMCNGIIILLIKI---HPALQTPMYFFLSNFSLLEICYVTIIIPRMLMDIWTQKGNISLFA---CATQMCFFLMLGGTECLL-LTVMAYDRYVAICKPL-QYPLVMNHKV------------CIQLIIASWTITIPVVIGETCQI-FLLPFCGTNTINHFFCDIPPILKLACGNIFVNEITVHVVAVVFITVPFLLIVVSYGKIISNILKLSSARGKA----KAFSTCSSHLIVVILFF------GAGTITYLQPKPHQFQRMGKL---ISLFYTILIPTLNPIIYTLRNKDIMVALRKLLAKLLT |
| 3CAP Chain:A ((35-312)) | ---------------WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF---MVFGGFTTTLYTSLHGYFVFGPTGCNLE-GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETN----------------------NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI--FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -260302 for 1752 contacts (-148.6/contact) +
2D Compatibility (PS) -24620 + (NN) -8119 + (LL) 3056
1D Compatibility (HY) -24000 + (ID) 3400
Total energy: -317385.0 ( -181.16 by residue)
QMean score : 0.161
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