Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MERTNDSTSTEFFLVGLSAHPKLQTVFFVLILWMYLMILLG---NGVLISVIIFDSHLHTPMYFFLCNLSFLDVCYTSSSVPLILASFLAVKKKVSFSGCMVQMFISFAMGATECMILGTMALDRYVAICYPLRYPVIMSKGAYVAMAAGSWVTGLVDSVVQTAFAMQLPFCANNVIKHFVCEILAILKLACADISINVISMTGSNLIVL-------VIPLLVISISYIFIVATILRIPSTEGKHKAFSTCSAHLTVVII------------FYGTIFFMYAKPESKASVDSGNEDIIEALISLFYGVMTPMLNPLIYSLRNKDVKAA-VKNILCRKNFSDGK |
| 3C9L Chain:A ((37-326)) | --------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF-TWVMALA--------------CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS----DFGP---IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248231 for 2054 contacts (-120.9/contact) +
2D Compatibility (PS) -27137 + (NN) -4815 + (LL) 3624
1D Compatibility (HY) -20400 + (ID) 3400
Total energy: -300359.0 ( -146.23 by residue)
QMean score : 0.300
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