Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNWVNKSVPQEFILLVFSDQPWLEIPPFVMFLFSYILTIFG-NLTIILVSHVDFKLHTPMYFFLSNLSLLDLCYTTSTVPQMLVNICNTRKVISYGGCVAQLFIFLALGSTECLLLAVMCFDRFVAICRPLHYSIIMHQRLCFQLAAASWISGFSNSVLQSTWTLKMPLCGHKEVDHFFCEVPALLKLSCV-------DTTANEAELFFISVLFLLIPVTLILISYAFIV----QAVLRIQSAEGQRKAFGTCGSHLIVVSL--------FYGTAISMYLQPPSPSSKDRGKM---VSLFCGIIAPMLNPLIYTLRNKEVKEAFKRLVAKSLLNQEIRNMQMISFAKDTVLTYLTNFSASCPIFVITIENYCNLPQRKFP |
| 3C9L Chain:A ((33-315)) | -------------------EPW-QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS---------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH----QGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230077 for 1981 contacts (-116.1/contact) +
2D Compatibility (PS) -25653 + (NN) -645 + (LL) 7120
1D Compatibility (HY) -23600 + (ID) 3100
Total energy: -275955.0 ( -139.30 by residue)
QMean score : 0.246
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