Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDGVNDSSLQGFVLMGISDHPQLEMIFFIAILFSYLLTLLG---NSTIILLSRLEARLHTPMYFFLSNLSSLDLAFATSSVPQMLINLWGPGKTISYGGCITQLYV----FLWLGATECIL---------------LVVMAFDRYVAVCRPL------RYTAIMNPQLCWLLAVIACLGGLGNSVIQSTFTLQLPLCGHRRVEGFLCEVPAMIKLACG-------DTSLNQAVLNGVCTFFTAVPLSIIVISYCLIAQAVLKIRSAEGRRKAFNTCLS--------------HLLVVFLFYGSASYGYLLPAKNSKQDQGKF---ISLFYSLVTPMVNPLIYTLRNMEVKGALRRLLGKGREVG |
| 1F88 Chain:A ((43-326)) | --------------------------------YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF-------------------MVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMA-LACAAP--------------PLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFV--IYMFVVHFIIPLIVIFFCY-GQLVFTVKEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAF-YIFTHQGS--DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152198 for 1534 contacts (-99.2/contact) +
2D Compatibility (PS) -23294 + (NN) -1444 + (LL) 5380
1D Compatibility (HY) -29200 + (ID) 3600
Total energy: -204356.0 ( -133.22 by residue)
QMean score : 0.271
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