Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCSFFLCQTGKQAKISMGEENQTFVSKFIFLGLSQDLQTQILLFILFLIIYLLTVLGNQLIIILIFLDSRLHTPMYFFLRNLSFADLCFSTSIVPQVLVHFLVKRKTISFYGCMTQIIVFLLVGCTECALLAVMSYDRYVAVCKPLYYSTIMTQRVCLWLSFRSWASGALVSLVDTSFTFHLPYWGQNIINHYFCEPPALLKLASIDTYSTEMAIFSMGVVILLAPVSLILGSYWNIISTVIQMQSGEG-RLKAFSTCGSHLIVVVLFYGSGIFTYMRPNSKTTK-ELDKMISVFYTAVTPMLNPIIYSLRNKDVKGALRKLVGRKCFSHRQ |
| 3NY8 Chain:A ((46-316)) | --------------------------------------------IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRAT-HQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTI-----GIGHLLTKSPSLNAAKSELDKAIGRNTNGV--ITKDEAEKLFNQDVDAAVRGILRNAKLKPVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NY8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179285 for 1788 contacts (-100.3/contact) +
2D Compatibility (PS) -27032 + (NN) -1450 + (LL) 4668
1D Compatibility (HY) -14400 + (ID) 3350
Total energy: -220849.0 ( -123.52 by residue)
QMean score : 0.191
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