Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGFYHVGQAAFELLTSSFILVGFSDRPHLELIVFVVVLIFYLLTLLG---NMTIVLLSALDSRLHTPMYFFLANLSFLDMCFTTGSIPQMLYN------LWGPDKTISYVGCAIQLYFVLALGGVECVLLAVMAYDRYAAVCKPLHYTIIMHPRLCGQLASVAWLSGFGNSLIMAPQTLMLPRCGHRRVDHFLCEMPALIGMAC-------VDTMMLEALAFALAIFII--LAPLILILISYGYVGGTVLRIKSAAGRK-------KAFNTCSSHLIVVSL--------FYGTIIYMYLQPANTYSQDQGKFLTL--FYTIVTPSVNPLIYTLRNKDVKEAMKKVLGKGSAEI |
| 3C9L Chain:A ((45-325)) | ----------------------------------------FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP------TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRFGENHA----IMGVAFTWVMALACAAPPLVGWSR---YIPE-----GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL---VFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP---IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176171 for 1786 contacts (-98.6/contact) +
2D Compatibility (PS) -25635 + (NN) -11207 + (LL) 5816
1D Compatibility (HY) -25200 + (ID) 3550
Total energy: -235947.0 ( -132.11 by residue)
QMean score : 0.284
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