Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEAGNQTGFLEFILLGLSEDPELQPFIFGLFLSMYLVT---VLGNLLIILAISSDSHLHTPMYFFLSNLSWVDICFSTCIVPKMLVNIQTENKAISYMDCLTQVYFSMFFPILDTLLLT-------VMAYDRFVAVCHPLHYMIIMNPHLCGLLVFVTWLIGVMTSLLHISLMMHLIFCKDFEIPHFFCELTYILQLACSDTFLNSTLIYFMTGVLGVFPLLGIIFSYSRIASSIRKMSSSGGK-----QKALSTCGSHLSVVSLFYGTGIGVHFTSAVTHSSQKISVASVMYTV------VTPMLNPFIYSLRNKDVKGALGSLLSRAASCL |
| 4LDL Chain:A ((179-463)) | -----------------------EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWC-------EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ--MHWYRATHQEAINCYAEET------CCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLGIIMGTFTLCWLP----FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222879 for 1797 contacts (-124.0/contact) +
2D Compatibility (PS) -25477 + (NN) 1656 + (LL) 3828
1D Compatibility (HY) -25200 + (ID) 3650
Total energy: -271722.0 ( -151.21 by residue)
QMean score : 0.287
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