Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGDHMVLGSSVTDKKAIILVTILLLLRLVAIAGNGFITAALGVEWVLRRML-LPCDKLLVSLGASRFCLQSVVMGKTIYVFLHPMAFPYNPVLQFLAFQWDFLNAATLWSSTWLSVFYCVKIAT-FTHPVFFWLKHKLSGWLPWMLFSSVGLSSFTTILFFIGNHRMYQNYLRNHLQPWNVTGDSIRS----YCEKFYLFPLKMITWTMPTAVFFICMILLITSLGRHRKKALLTTSG------------------------------------------------------------------------------------------------------------------------------------------------------FREPSVQAHIKALLALLSFAMLFISYFLSLVFS-AAGI-F------------PPLDFKFWVWESVIYLCAAVHPIILLFSNCRLRAVLKSRRSSRCGTP |
| 3ODU Chain:A ((43-496)) | -----------NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGY----QKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPR--KLLAE---KVVYVGVWIPALLLTIPDFIFANV-------SEAD-D--RYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210382 for 2012 contacts (-104.6/contact) +
2D Compatibility (PS) -28438 + (NN) -5613 + (LL) 2088
1D Compatibility (HY) -17200 + (ID) 2050
Total energy: -261595.0 ( -130.02 by residue)
QMean score : 0.227
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