Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADKVQTTLLFLAVGEFSVGILGNAFIGLVNCMDWVKKRKIASIDLILTSLAISRICLLCVILLDCFILVLYPDVYATGKEMRIIDFFWTLTNHLSIWFATCLSIYYFFKIGNFFHPLFLWMKWRIDRVISWILLGCVVLSVFISLPATENLNADFRFCVKAKRKTNLTWSCRVNKTQHASTKLFLNLATLLPFCVCLMSFFLLILSLRRHIRRMQLSATGCRDPSTEAHVRALKAVISFLLLFIAYYLSFLIATSSYFMPETE-LAVIFGESIA-----LIYPSSHSFILILGNNKLRHASLKVIWKVMSILKGRKFQQHKQI |
1V4H Chain:A ((44-139)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVRLSILSAKNRGVEIGEDAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPI |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1V4H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -59289 for 536 contacts (-110.6/contact) +
2D Compatibility (PS) -9458 + (NN) -3698 + (LL) 20232
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: -57863.0 ( -107.95 by residue)
QMean score : 0.200
|
|
|