Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCFMFLEFLFSTLFIMLIMVLSVFQIILVVILVILVLLQPPGSSSLSGFSNSQ--QGFNSIIPVKSSANPLNKITAIVAGLFIMNTLLLSGLCSKDVHKKSIAEKIILEKQQENESTSVPFEN
2AKH Chain:X ((1-77))
----------------MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATL---FGSSGSGNFMTRMTALLATLFFIISLVLGNINSNK---------------------------
General information:
TITO was launched using:
RESULT:
Template:
2AKH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -236483 for 2775 contacts (-85.2/contact) +
2D Compatibility (PS) -7226 + (NN) 5786 + (LL) 4472
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -237051.0 ( -85.42 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_2AKH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AKH-query.scw
PDB file :
Tito_Scwrl_2AKH.pdb
: