Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGAAPINIPAGVSVECNDGKVLIKSAKAEKELRLCSDIVCQVTDNQLVLSVDQGKDSYNEIKPIWGTYRSNINNIINGIVNGFSVDLEINGIGYKAECDGKYLTLYLGYSHNIKYKVPKDVEIKCIKPTHLVVNGMDKQKVYVIASDICKIRKYDPYKGKGIVIKGKFMLRKVVSKKK
1C04 Chain:B ((7-168))
-------PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGN--VITVTRPSDEKHH-RALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL-------
General information:
TITO was launched using:
RESULT:
Template:
1C04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103962 for 1183 contacts (-87.9/contact) +
2D Compatibility (PS) -17438 + (NN) -1189 + (LL) 1860
1D Compatibility (HY) -10000 + (ID) 3000
Total energy: -133729.0 ( -113.04 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1C04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C04-query.scw
PDB file :
Tito_Scwrl_1C04.pdb
: