Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLYDMQKNYAPLLANLGLIYMKKENYKGAKEYMVTVISLDQNNIFYIYNLAVILDKLSDFKNAAIFYLKLLNMAANLKDVSKKIPICKVEARLKFIKLHSTD
1NA3 Chain:A ((7-87))
---------NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG----------
General information:
TITO was launched using:
RESULT:
Template:
1NA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64048 for 613 contacts (-104.5/contact) +
2D Compatibility (PS) -8453 + (NN) -5381 + (LL) 2388
1D Compatibility (HY) 0 + (ID) 1300
Total energy: -76794.0 ( -125.28 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1NA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NA3-query.scw
PDB file :
Tito_Scwrl_1NA3.pdb
: