Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDIVLATGGTGGHIFPAITLARAIKRQGYDSILFADKKTGKNTDVKDYTLPLN--KPGGNKFRFFLLLIYSCVL---ALYQIRKL----KPKLVIGFGGYASFPTLLAAKVLSIPIILHEQNAVLGRVNKFFFNSAELIATSFPETKYAKGNKCVFIGNFV--DIKA-----KSHSSTKKILTVLIIAGSQGANFFDDVVSSVICNLPIEIRKKIRVVQQCMKKNMNKVEGLY-KGGQVICELSEFFDDMGSRLTDAHLVISRAGATSIAEITLARRPAIYIPYPCSKDDHQFYNAEYIKDSGAAVVVEQNSEVKKNLTKLLVNLLGDSQKLRDMANNTKKIRIKNGVTEFIRIVIHKLG |
| 1NLM Chain:A ((9-307)) | --LMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPG---AFPNAEV-VGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKL----GDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPF-QHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NLM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168693 for 2354 contacts (-71.7/contact) +
2D Compatibility (PS) -30139 + (NN) -10373 + (LL) 624
1D Compatibility (HY) -15600 + (ID) 4700
Total energy: -228881.0 ( -97.23 by residue)
QMean score : 0.488
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