Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHQTIRVNHAGEYGAICIYYGQKFILKKSSIINKIIEMEGQEKKHFHYFNGKIKEQ-KVRPTVLLPVWYVLGVSLGVITAIMGKKAAMACTAAVEEVIGEHYREQVSYLEDGELKEIISKFCNEELEHRDIAIEHNAESALGYNILSSFVKTGCKVAIYLSKLI
3NAW Chain:A ((546-598))
-----------------------------------------------YANGLIEQAYKTDPQVFGSVYYYNDI----LDRLQGRNNVFTCTAVLTDMLTEHAKESFPEIFSLYYPVAWR---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3NAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22130 for 269 contacts (-82.3/contact) +
2D Compatibility (PS) -5156 + (NN) -130 + (LL) 7472
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -24744.0 ( -91.99 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_3NAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NAW-query.scw
PDB file :
Tito_Scwrl_3NAW.pdb
: