Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
2KNC Chain:A ((963-988))
-------------------------------------------------------------------------------------------AIPIWWVLVGVLGGLLLLTILVLAMW----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12100 for 105 contacts (-115.2/contact) +
2D Compatibility (PS) -2463 + (NN) -133 + (LL) 10332
1D Compatibility (HY) -3200 + (ID) 150
Total energy: -7714.0 ( -73.47 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_2KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNC-query.scw
PDB file :
Tito_Scwrl_2KNC.pdb
: