Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLPIIALDFESKEKVNQFLDLFD-ESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQHTK----IIAVTQLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
1DBT Chain:A ((4-234))
--NLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEW--
General information:
TITO was launched using:
RESULT:
Template:
1DBT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111285 for 1890 contacts (-58.9/contact) +
2D Compatibility (PS) -24663 + (NN) -12367 + (LL) 640
1D Compatibility (HY) -24000 + (ID) 6150
Total energy: -177825.0 ( -94.09 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_1DBT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBT-query.scw
PDB file :
Tito_Scwrl_1DBT.pdb
: