Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKDADVAIDFSNPNLLFPLLDEEFH--LPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILA-AAVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENV---TPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
4F3Y Chain:A ((71-268))
------------------------------------------------CAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSYAQGALRAARFLAGRDAGFFDMQDV
General information:
TITO was launched using:
RESULT:
Template:
4F3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97078 for 1388 contacts (-69.9/contact) +
2D Compatibility (PS) -20684 + (NN) -9729 + (LL) 3864
1D Compatibility (HY) -12400 + (ID) 3900
Total energy: -139927.0 ( -100.81 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4F3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3Y-query.scw
PDB file :
Tito_Scwrl_4F3Y.pdb
: