Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLNIFLKK
2ZCM Chain:A ((2-184))
-KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFM--------YSIDGLYQFLFKFIFDVDERYIKLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIALDKEDFINMILMFLETWYFRASFSQKFGIIEDSKNRFKDQVYSLLNVFLK-
General information:
TITO was launched using:
RESULT:
Template:
2ZCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17992 for 1205 contacts (-14.9/contact) +
2D Compatibility (PS) -17847 + (NN) -1744 + (LL) 672
1D Compatibility (HY) -6000 + (ID) 2650
Total energy: -45561.0 ( -37.81 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_2ZCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZCM-query.scw
PDB file :
Tito_Scwrl_2ZCM.pdb
: