Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIQTVVAAAVLYIATAVDLLVILLIFFARAKTRKEYRDIYVGQYLGSIILILVSLFLAFVLNYVPEKWILGLLGLIPIYLGIKVAIYDDCEGEKRAKKELNEKGLSKLVGTVAIVTIASCGADNIGLFVPYFVTLSVTNLLLTLFVFLILIFFLVFTAQKLANIPGIGEIVEKFSRWIMAIIYIALGLFIIIENDTIQTILGFIF |
| 1CN3 Chain:F ((12-28)) | ------------------------------------------------------------HQRVTPDWM------LPLILGLY-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CN3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7911 for 60 contacts (-131.8/contact) +
2D Compatibility (PS) -1650 + (NN) 1717 + (LL) 19420
1D Compatibility (HY) -2400 + (ID) 250
Total energy: 8926.0 ( 148.77 by residue)
QMean score : -0.206
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