Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGVSPDNSQSHQKFISQCSLNVILLCDEDKKVANLYKAYGKRMLYGKEHLGIIRSTFIINTQGVLEKCFYNVKAKGHAQKVLESL
3GKM Chain:A ((9-157))
---LELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGSTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFSAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAAL
General information:
TITO was launched using:
RESULT:
Template:
3GKM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86552 for 1140 contacts (-75.9/contact) +
2D Compatibility (PS) -16297 + (NN) -6041 + (LL) 376
1D Compatibility (HY) -8400 + (ID) 2800
Total energy: -119714.0 ( -105.01 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3GKM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKM-query.scw
PDB file :
Tito_Scwrl_3GKM.pdb
: