Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDNERTIVVRVLKFDPQSAVNKPHFKEYQLKETPSMTLFIALNLIREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFENGVITLMPMPSFTLIKDLSVNTGDWFSDMTKRVESWAHSKEEVDITKPEKRVEPDEAQEVFELDRCIECGCCIASCGTKLMRPNFIGAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVFGCMSLIACHDTCPKELPLQSSIATLRNRMLKVGKSR
1E7P Chain:B ((3-238))
-----RMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSVN---
General information:
TITO was launched using:
RESULT:
Template:
1E7P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139961 for 1794 contacts (-78.0/contact) +
2D Compatibility (PS) -25282 + (NN) -8124 + (LL) -8
1D Compatibility (HY) -33600 + (ID) 8350
Total energy: -215325.0 ( -120.03 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_1E7P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E7P-query.scw
PDB file :
Tito_Scwrl_1E7P.pdb
: