Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISVDFSKGLVPTIILDDQNGDVLMLAYMNEESYQKTLE--TGYTWFFSRSRNELWNKGATSGHTQKV------KQIWTDCDNDTLLIRVTQIGPACHTGKKSCFFNLIKEDF
2VVM Chain:A ((315-425))
--TIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEF
General information:
TITO was launched using:
RESULT:
Template:
2VVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13379 for 602 contacts (22.2/contact) +
2D Compatibility (PS) -10724 + (NN) 823 + (LL) 412
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -1110.0 ( -1.84 by residue)
QMean score : 0.041
(partial model without unconserved sides chains):
PDB file :
Tito_2VVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVM-query.scw
PDB file :
Tito_Scwrl_2VVM.pdb
: