Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLLAILSMVLLLSLAACGGSSDSSKDKNGKEEIVMWGSWSGDQIKQLEKQIDSYNK-SQDKYKVKYVMQENVEEKLLTGIAGGELPDIIMWDRYQ-TALYAPKGVLEPLDKLVKEDNLKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVKPPTTWDELATAAQK-TTKWDGNKMTQAGMSLQDVGLF------NLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQNDLKVYQRGFDDG--SDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDK--GAIMGGFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKALSQAEKEGNQILKEERDK |
| 2GH9 Chain:A ((2-338)) | ----------------------------------KITVWTHFGGPELEWLKEQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLEPVGKYVTQAYLA--DLQGVAVEAFTFGGRLMGLPAFAESVALIYNKKYVKE----PPRTWEEFLALAQKLTTGATFGFLYNIGDPYFNFGFFKAFGAENVFAKDAKGNL---DPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILNGPWALGDYKKAK-VDFGIAPFPVPPGAKNPWGPFLGVQGVVVNAYSKNKTQAVNFAKTLVTG-RNLVAFNQAGGRIPVSKSAVKQ--LEKDPVVAGFSKVFPLGAPMPNI---------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GH9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65862 for 2683 contacts (-24.5/contact) +
2D Compatibility (PS) -33899 + (NN) -11646 + (LL) 5848
1D Compatibility (HY) -20800 + (ID) 4900
Total energy: -131259.0 ( -48.92 by residue)
QMean score : 0.493
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