Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLEYCKASCEIHNSASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRSIPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPVPSRESLRSYAAHQTSMVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGITKTALIMVGDFLG-EEFYYSKLYDKDFKHEYR
3NEI Chain:A ((23-250))
---VHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRT----AMPAGETLENFARTGAVLAIHLSVHVLDEVVQKLVP-HYGEDCPVAIVWRASWPDQRVVRATLATLQTSLG-AELERTALILVGRSLAT------------------
General information:
TITO was launched using:
RESULT:
Template:
3NEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180622 for 1737 contacts (-104.0/contact) +
2D Compatibility (PS) -23969 + (NN) -7259 + (LL) 1688
1D Compatibility (HY) -22800 + (ID) 4500
Total energy: -237462.0 ( -136.71 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3NEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NEI-query.scw
PDB file :
Tito_Scwrl_3NEI.pdb
: