Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMAQRFQVAKMLHDGKTYNVIESETGASTATISRVKRSLHYGNDMYDVVFSRMTKPE
3G1C Chain:A ((4-93))
----KLKTQAVEQLFQAILSLKDLDEAYDFFEDVCTINEILSLSQRFEVAKMLREHRTYLDIAEKTGASTATISRVNRSLNYGNDGYDRVFERL----
General information:
TITO was launched using:
RESULT:
Template:
3G1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21407 for 513 contacts (-41.7/contact) +
2D Compatibility (PS) -9759 + (NN) -2175 + (LL) 716
1D Compatibility (HY) -10400 + (ID) 2750
Total energy: -45775.0 ( -89.23 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3G1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G1C-query.scw
PDB file :
Tito_Scwrl_3G1C.pdb
: