Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKQRQLLLKIENLEDDFNRKRRQLDEAMDEASQEKWRFHQELENLSEQIRYIYQKRDYDASEDLPKAYHLISSIQEEGEWMVKNAVTHLENESEEHQTLYKKQVTAYEEELHQLKKERD
1LDK Chain:A ((289-334))
--------------------------------------FHTEFQNL----------LDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQG--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5987 for 255 contacts (-23.5/contact) +
2D Compatibility (PS) -4886 + (NN) -2354 + (LL) 6840
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -9737.0 ( -38.18 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1LDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LDK-query.scw
PDB file :
Tito_Scwrl_1LDK.pdb
: