Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEKLLVPALNCLLGLLFLGDHWFLFRLQNGELFAIVTLILLCTTSFLINKNHPKNLTLISMIITFLAVLSFLSTFLLA
1YGT Chain:A ((87-108))
-------------------TDGSCTVRWENKTMYCIVSVFGLAV-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11613 for 81 contacts (-143.4/contact) +
2D Compatibility (PS) -2432 + (NN) 1035 + (LL) 5096
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -10564.0 ( -130.42 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_1YGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YGT-query.scw
PDB file :
Tito_Scwrl_1YGT.pdb
: