Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKG-SNGE--READFINVVMWGRLAETLASYGTKGSLISVDGELRTRKY-EKDGQTHYITEV---LASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF
4MZ9 Chain:A ((7-115))
--NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG---------------------------
General information:
TITO was launched using:
RESULT:
Template:
4MZ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29779 for 605 contacts (-49.2/contact) +
2D Compatibility (PS) -11463 + (NN) -3996 + (LL) 2116
1D Compatibility (HY) -8000 + (ID) 1900
Total energy: -53022.0 ( -87.64 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_4MZ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MZ9-query.scw
PDB file :
Tito_Scwrl_4MZ9.pdb
: